[Carpet] recombine chuncked hdf5 files

Thomas Radke tradke at aei.mpg.de
Thu May 4 18:44:15 CEST 2006


Erik Schnetter wrote:
> On Apr 13, 2006, at 11:52:34, Christian David Ott wrote:
> 
>>
>> Hi,
>>
>> attached is a tar.gz file containing a carpet hdf5 recombiner  written 
>> by Burkhard Zink (I think) and me. We largely salvaged from  the PUGH 
>> hdf5 recombiner. You can at most recombine 2 files at a  time. Set up 
>> a script to go through all your files if you don't  want to modify the 
>> code.
> 
> 
> Would it be worthwhile to put this into CarpetIOHDF5/src/util?

I'm not sure. Luca and I have tried it, it seems to do the same job as 
the hdf5_merge utility from CactusPUGHIO/IOHDF5; all datasets from the 
two input files are simply copied over into the output file, there is no 
recombination of different processor components into a single unchunked 
dataset. I guess that's what Luca was originally asking for.

It's also not clear yet whether we really need such a recombiner utility 
for Carpet HDF5 datafiles. The question arised when Luca et.al. wanted 
to visualise Carpet HDF5 data using Matlab. He is currently 
investigating ways of how to do that within Matlab for both unchunked 
and chunked data.

-- 
Cheers, Thomas.



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